2PVB Metal Binding Protein date Oct 02, 1998
title Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And Atomic Resolution (0.91 A).
authors J.P.Declercq, C.Evrard
compound source
Molecule: Protein (Parvalbumin)
Chain: A
Other_details: (Pike Pi 4.10)
Organism_scientific: Esox Lucius
Organism_common: Northern Pike
Organism_taxid: 8010
Tissue: Muscle
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.030 49.810 34.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.91 Å
ligand ACE, CA, FMT, NH4 enzyme
note 2PVB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the EF-hand parvalbumin at atomic resolution (0.91 A) and at low temperature (100 K). Evidence for conformational multistates within the hydrophobic core., Declercq JP, Evrard C, Lamzin V, Parello J, Protein Sci 1999 Oct;8(10):2194-204. PMID:10548066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvb.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2PVB
  • CSU: Contacts of Structural Units for 2PVB
  • Likely Quarternary Molecular Structure file(s) for 2PVB
  • Structure Factors (994 Kb)
  • Retrieve 2PVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVB from S2C, [Save to disk]
  • Re-refined 2pvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 2PVB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PVB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2pvba_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 2pvb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvb_A] [2pvb]
  • SWISS-PROT database: [P02619]
  • Domain organization of [PRVB_ESOLU] by SWISSPFAM
  • Domain found in 2PVB: [EFh ] by SMART
  • Other resources with information on 2PVB
  • Community annotation for 2PVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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