2XDP Crystal structure of the tudor domain of human JMJD2C date
authors Yue, W.W., Gileadi, C., Krojer, T., Weisbach, H., Ugochukwu, E., Daniel, M., Phillips, C., Chaikuad, A., Delft, F.von., Allerston, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.
compound source
symmetry
R_factor
R_Free 0.2064
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2xdp.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2XDP
  • CSU: Contacts of Structural Units for 2XDP
  • Structure Factors (1203 Kb)
  • Retrieve 2XDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XDP from S2C, [Save to disk]
  • Re-refined 2xdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XDP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XDP, from MSDmotif at EBI
  • Fold representative 2xdp from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xdp] [2xdp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XDP: [TUDOR ] by SMART
    • Other resources with information on 2XDP
  • Community annotation for 2XDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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