352D Dna date Sep 04, 1997
title The Crystal Structure Of A Parallel-Stranded Parallel-Strand Tetraplex At 0.95 Angstrom Resolution
authors K.Phillips, Z.Dauter, A.I.H.Murchie, D.M.J.Lilley, B.Luisi
compound source
Molecule: Dna (5'-D(Tpgpgpgpgpt)-3')
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.280 34.780 56.230 74.31 77.68 89.81
method X-Ray Diffractionresolution 0.95 Å
ligand CA, NA enzyme
Primary referenceThe crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution., Phillips K, Dauter Z, Murchie AI, Lilley DM, Luisi B, J Mol Biol 1997 Oct 17;273(1):171-82. PMID:9367755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (352d.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (352d.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (352d.pdb3.gz) 14 Kb
  • Biological Unit Coordinates (352d.pdb4.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 352D
  • CSU: Contacts of Structural Units for 352D
  • Likely Quarternary Molecular Structure file(s) for 352D
  • Structure Factors (1120 Kb)
  • Retrieve 352D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 352D from S2C, [Save to disk]
  • Re-refined 352d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 352D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 352D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 352D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [352d_D] [352d_O] [352d_I] [352d_J] [352d_B] [352d] [352d_C] [352d_K] [352d_A] [352d_L] [352d_M] [352d_N] [352d_H] [352d_E] [352d_F] [352d_G] [352d_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 352D
  • Community annotation for 352D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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