362D Dna date Aug 20, 1997
title The Structure Of D(Tgcgca)2 And A Comparison To Other Z-Dna Hexamers
authors N.A.Harper, J.A.Brannigan, M.Buck, R.J.Lewis, M.H.Moore, B.Schneider
compound source
Molecule: Dna (5'-D(Tpgpcpgpcpa)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
21.162 28.670 44.335 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand NCO enzyme
note 362D supersedes 347D
Primary referenceStructure of d(TGCGCA)2 and a comparison to other DNA hexamers., Harper A, Brannigan JA, Buck M, Hewitt L, Lewis RJ, Moore MH, Schneider B, Acta Crystallogr D Biol Crystallogr 1998 Nov 1;54(Pt 6 Pt 2):1273-84. PMID:10089504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (362d.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 362D
  • CSU: Contacts of Structural Units for 362D
  • Likely Quarternary Molecular Structure file(s) for 362D
  • Structure Factors (59 Kb)
  • Retrieve 362D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 362D from S2C, [Save to disk]
  • Re-refined 362d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 362D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 362D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 362D, from MSDmotif at EBI
  • Fold representative 362d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [362d] [362d_A] [362d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 362D
  • Community annotation for 362D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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