3A0K Sugar Binding Protein date Mar 20, 2009
title Crystal Structure Of An Antiflamatory Legume Lectin From Cym Roseum Seeds
authors B.A.M.Rocha, P.Delatorre, E.S.Marinho, R.G.Benevides, T.R.Moura, L.A.G.Souza, K.S.Nascimento, A.H.Sampaio, B.S.Cavada
compound source
Molecule: Cymbosema Roseum Mannose-Specific Lectin
Chain: A, C, E, G
 Organism_scientific: Cymbosema Roseum
Organism_taxid: 202239
Other_details: Seeds
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.034 103.074 122.334 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ABA, CA, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceStructural basis for both pro- and anti-inflammatory response induced by mannose-specific legume lectin from Cymbosema roseum., Rocha BA, Delatorre P, Oliveira TM, Benevides RG, Pires AF, Sousa AA, Souza LA, Assreuy AM, Debray H, de Azevedo WF Jr, Sampaio AH, Cavada BS, Biochimie. 2011 Jan 26. PMID:21277932
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (3a0k.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 3A0K
  • CSU: Contacts of Structural Units for 3A0K
  • Structure Factors (1230 Kb)
  • Retrieve 3A0K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A0K from S2C, [Save to disk]
  • Re-refined 3a0k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3A0K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3A0K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A0K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a0k_C] [3a0k_A] [3a0k] [3a0k_G] [3a0k_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3A0K
  • Community annotation for 3A0K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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