3A2C Transferase date May 12, 2009
title Crystal Structure Of A Pyrazolopyrimidine Inhibitor Complex Mapkap Kinase-2 (Mk2)
authors A.Fujino, M.Takimoto-Kamimura
compound source
Molecule: Map Kinase-Activated Protein Kinase 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Kinase Domaine, Residues 41-364
Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b(+)
symmetry Space Group: P 21 21 21
R_factor 0.288 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.157 180.956 216.096 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand PDY, SO4 BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceStructural analysis of an MK2-inhibitor complex: insight into the regulation of the secondary structure of the Gly-rich loop by TEI-I01800., Fujino A, Fukushima K, Namiki N, Kosugi T, Takimoto-Kamimura M, Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):80-7. Epub 2009 Dec, 21. PMID:20057052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (555 Kb) [Save to disk]
  • Biological Unit Coordinates (3a2c.pdb1.gz) 544 Kb
  • LPC: Ligand-Protein Contacts for 3A2C
  • CSU: Contacts of Structural Units for 3A2C
  • Structure Factors (2202 Kb)
  • Retrieve 3A2C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A2C from S2C, [Save to disk]
  • Re-refined 3a2c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A2C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A2C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A2C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a2c_I] [3a2c_E] [3a2c_L] [3a2c_A] [3a2c_H] [3a2c] [3a2c_G] [3a2c_F] [3a2c_D] [3a2c_B] [3a2c_C] [3a2c_J] [3a2c_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A2C: [S_TKc ] by SMART
  • Other resources with information on 3A2C
  • Community annotation for 3A2C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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