3A42	Hydrolase	date	Jun 30, 2009
title	Crystal Structure Of Mvnei1
authors	K.Imamura, S.Wallace, S.Doublie
compound		source
Molecule: Formamidopyrimidine-Dna Glycosylase Chain: A Synonym: Fapy-Dna Glycosylase, Dna-(Apurinic Or Apyrimidini Lyase, Ap Lyase, Endonuclease Viii Mvnei1; Ec: 3.2.2.23 Engineered: Yes		Organism_scientific: Acanthamoeba Polyphaga Mimivirus Organism_common: Apmv Organism_taxid: 212035 Gene: L315, Mimi_l315 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3)Plys Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 65	R_factor 0.209 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.241 123.241 44.849 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GOL, SO4	enzyme	Hydrolase E.C.3.2.2.23 BRENDA
Gene	MIMI
Gene Ontology	Chain Function Process Component A
Primary reference	Structural characterization of a viral NEIL1 ortholog unliganded and bound to abasic site-containing DNA., Imamura K, Wallace SS, Doublie S, J Biol Chem. 2009 Jul 22. PMID:19625256

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3a42.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 3A42 CSU: Contacts of Structural Units for 3A42 Likely Quarternary Molecular Structure file(s) for 3A42 Structure Factors (285 Kb) Retrieve 3A42 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A42 from S2C, [Save to disk] Re-refined 3a42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A42 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3A42

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A42, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a42] [3a42_A] SWISS-PROT database: [Q5UQ00] Domain organization of [FPG_MIMIV] by SWISSPFAM Domains found in 3A42: [Fapy_DNA_glyco] [H2TH ] by SMART

Other resources with information on 3A42

Community annotation for 3A42 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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