3A4O	Transferase	date	Jul 11, 2009
title	Lyn Kinase Domain
authors	N.Miyano, T.Kinoshita, T.Tada
compound		source
Molecule: Tyrosine-Protein Kinase Lyn Chain: X Fragment: Residues In Unp 233-512 Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1
symmetry	Space Group: H 3	R_factor 0.293 R_Free 0.324
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.382 128.382 54.875 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	STU BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Structural basis for the inhibitor recognition of human Lyn kinase domain., Miyano N, Kinoshita T, Nakai R, Kirii Y, Yokota K, Tada T, Bioorg Med Chem Lett. 2009 Dec 1;19(23):6557-60. Epub 2009 Oct 13. PMID:19857964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3a4o.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 3A4O CSU: Contacts of Structural Units for 3A4O Structure Factors (43 Kb) Retrieve 3A4O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A4O from S2C, [Save to disk] Re-refined 3a4o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A4O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3A4O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A4O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a4o_X] [3a4o] SWISS-PROT database: [P07948] Domain organization of [LYN_HUMAN] by SWISSPFAM Domain found in 3A4O: [TyrKc ] by SMART

Other resources with information on 3A4O

Community annotation for 3A4O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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