3A62 Transferase date Aug 18, 2009
title Crystal Structure Of Phosphorylated P70s6k1
authors T.Sunami, N.Byrne, R.E.Diehl, K.Funabashi, D.L.Hall, M.Ikuta, S.B.Patel, J.M.Shipman, R.F.Smith, I.Takahashi, J.Zugay-Murphy, Y.Iwasawa, K.J.Lumb, S.K.Munshi, S.Sharma
compound source
Molecule: Ribosomal Protein S6 Kinase Beta-1
Chain: A
Fragment: Unp Residues 75-399
Synonym: Ribosomal Protein S6 Kinase I, S6k1, S6k, 70 Kda Ribosomal Protein S6 Kinase 1, P70 S6 Kinase Alpha, P70(S6k)-Alpha, P70-S6k, P70s6k, P70-Alpha;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculo Virus
Expression_system_plasmid: Pvl1392
symmetry Space Group: P 41 21 2
R_factor 0.229 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.742 68.742 144.589 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand MN, STU, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of human p70 ribosomal S6 kinase-1 regulation by activation loop phosphorylation., Sunami T, Byrne N, Diehl RE, Funabashi K, Hall DL, Ikuta M, Patel SB, Shipman JM, Smith RF, Takahashi I, Zugay-Murphy J, Iwasawa Y, Lumb KJ, Munshi SK, Sharma S, J Biol Chem. 2010 Feb 12;285(7):4587-94. Epub 2009 Oct 28. PMID:19864428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3a62.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3A62
  • CSU: Contacts of Structural Units for 3A62
  • Structure Factors (138 Kb)
  • Retrieve 3A62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A62 from S2C, [Save to disk]
  • Re-refined 3a62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A62
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A62, from MSDmotif at EBI
  • Fold representative 3a62 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a62] [3a62_A]
  • SWISS-PROT database: [P23443]
  • Domain organization of [KS6B1_HUMAN] by SWISSPFAM
  • Domains found in 3A62: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3A62
  • Community annotation for 3A62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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