3A73 Lipid Binding Protein date Sep 11, 2009
title Crystal Structure Analysis Of Human Serum Albumin Complexed 12-Prostaglandin J2
authors S.Ito
compound source
Molecule: Serum Albumin
Chain: A, B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Secretion: Serum
symmetry Space Group: P 1
R_factor 0.229 R_Free 0.291
length a length b length c angle alpha angle beta angle gamma
38.060 92.047 94.664 74.80 89.53 80.21
method X-Ray Diffractionresolution 2.19 Å
ligand MYR, PJ2 enzyme
A, B
  • antioxidant activity

  • Primary referenceDelta12-prostaglandin J2 as a product and ligand of human serum albumin: formation of an unusual covalent adduct at His146., Yamaguchi S, Aldini G, Ito S, Morishita N, Shibata T, Vistoli G, Carini M, Uchida K, J Am Chem Soc. 2010 Jan 20;132(2):824-32. PMID:20014793
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (3a73.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (3a73.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3A73
  • CSU: Contacts of Structural Units for 3A73
  • Structure Factors (887 Kb)
  • Retrieve 3A73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A73 from S2C, [Save to disk]
  • Re-refined 3a73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A73
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A73, from MSDmotif at EBI
  • Fold representative 3a73 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a73_B] [3a73] [3a73_A]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 3A73: [ALBUMIN ] by SMART
  • Other resources with information on 3A73
  • Community annotation for 3A73 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science