OCA Atlas for 3A8J

3A8J

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

LA2

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, A, C, B
F, E

Primary reference

Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism., Okamura-Ikeda K, Hosaka H, Maita N, Fujiwara K, Yoshizawa AC, Nakagawa A, Taniguchi H, J Biol Chem. 2010 Jun 11;285(24):18684-92. Epub 2010 Apr 6. PMID:20375021

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]

Biological Unit Coordinates (3a8j.pdb1.gz) 85 Kb

Biological Unit Coordinates (3a8j.pdb2.gz) 86 Kb

Biological Unit Coordinates (3a8j.pdb3.gz) 64 Kb

Biological Unit Coordinates (3a8j.pdb4.gz) 65 Kb

LPC: Ligand-Protein Contacts for 3A8J

CSU: Contacts of Structural Units for 3A8J

Structure Factors (2038 Kb)

Retrieve 3A8J in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3A8J from S2C, [Save to disk]

Re-refined 3a8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A8J in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a8j] [3a8j_A] [3a8j_B] [3a8j_C] [3a8j_D] [3a8j_E] [3a8j_F]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]