3A8N Signaling Protein date Oct 07, 2009
title Crystal Structure Of The Tiam1 Phccex Domain
authors S.Terawaki, K.Kitano, T.Mori, Y.Zhai, Y.Higuchi, N.Itoh, T.Watanabe, K.Kaibuchi, T.Hakoshima
compound source
Molecule: T-Lymphoma Invasion And Metastasis-Inducing Protein 1;
Chain: A
Fragment: Phccex Domain, Residues 429-702
Synonym: Tiam-1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tiam1, Tiam-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-3
symmetry Space Group: P 64 2 2
R_factor 0.306 R_Free 0.396
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.470 113.470 113.837 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module., Terawaki SI, Kitano K, Mori T, Zhai Y, Higuchi Y, Itoh N, Watanabe T, Kaibuchi K, Hakoshima T, EMBO J. 2009 Nov 5. PMID:19893486
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3a8n.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 3A8N
  • Structure Factors (25 Kb)
  • Retrieve 3A8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A8N from S2C, [Save to disk]
  • Re-refined 3a8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A8N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A8N, from MSDmotif at EBI
  • Fold representative 3a8n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a8n] [3a8n_A]
  • SWISS-PROT database: [Q60610]
  • Domain organization of [TIAM1_MOUSE] by SWISSPFAM
  • Domain found in 3A8N: [PH ] by SMART
  • Other resources with information on 3A8N
  • Community annotation for 3A8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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