3A98 Signaling Protein date Oct 21, 2009
title Crystal Structure Of The Complex Of The Interacting Regions And Elmo1
authors K.Hanawa-Suetsugu, M.Kukimoto-Niino, S.Sekine, T.Ito, C.Mishima- Tsumagari, T.Terada, M.Shirouzu, Y.Fukui, S.Yokoyama
compound source
Molecule: Dedicator Of Cytokinesis Protein 2
Chain: A, C
Fragment: N-Terminal Domains, Sh3 Domain, Residues 1-177
Synonym: Dock2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dock2, Kiaa0209
Expression_system: Cell Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px080711-01

Molecule: Engulfment And Cell Motility Protein 1
Chain: B, D
Fragment: C-Terminal Domains, Ph Domain, Residues 532-727
Synonym: Elmo1, Ced-12 Homolog
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elmo1, Kiaa0281
Expression_system: Cell Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px080910-01
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.837 104.028 124.731 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3a98.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3a98.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3A98
  • CSU: Contacts of Structural Units for 3A98
  • Structure Factors (402 Kb)
  • Retrieve 3A98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A98 from S2C, [Save to disk]
  • Re-refined 3a98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A98
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3A98, from MSDmotif at EBI
  • Fold representative 3a98 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a98] [3a98_A] [3a98_C] [3a98_D] [3a98_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3A98: [PH] [SH3 ] by SMART
  • Other resources with information on 3A98
  • Community annotation for 3A98 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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