3ABD Cell Cycle Replication date Dec 07, 2009
title Structure Of Human Rev7 In Complex With A Human Rev3 Fragmen Monoclinic Crystal
authors K.Hara, H.Hashimoto, Y.Murakumo, S.Kobayashi, T.Kogame, S.Unzai, S S.Takeda, T.Shimizu, M.Sato
compound source
Molecule: Mitotic Spindle Assembly Checkpoint Protein Mad2b
Chain: A, B
Synonym: Rev7, Mad2-Like 2, Hrev7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rev7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet

Molecule: Dna Polymerase Zeta Catalytic Subunit
Chain: X, Y
Fragment: Residues 1847-1898
Synonym: Rev3, Hrev3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rev3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.870 50.009 107.275 90.00 96.90 90.00
method X-Ray Diffractionresolution 1.90 Å
note 3ABD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of doubl...

  • Primary referenceCrystal structure of human REV7 in complex with a Human REV3 fragment and structural implication of the interaction between dna polymerase zeta and REV1., Hara K, Hashimoto H, Murakumo Y, Kobayashi S, Kogame T, Unzai S, Akashi S, Takeda S, Shimizu T, Sato M, J Biol Chem. 2010 Apr 16;285(16):12299-307. Epub 2010 Feb 17. PMID:20164194
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3abd.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3abd.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3ABD
  • Structure Factors (512 Kb)
  • Retrieve 3ABD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ABD from S2C, [Save to disk]
  • Re-refined 3abd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ABD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ABD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ABD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3abd_A] [3abd_B] [3abd_X] [3abd] [3abd_Y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ABD
  • Community annotation for 3ABD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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