3ABH Endocytosis date Dec 11, 2009
title Crystal Structure Of The Efcf-Bar Domain Of Human Pacsin2syndapin II (2.0 A)
authors A.Shimada, M.Shirouzu, K.Hanawa-Suetsugu, T.Terada, T.Umehara, S.Suetsugu, M.Yamamoto, S.Yokoyama
compound source
Molecule: Protein Kinase C And Casein Kinase Substrate In Neurons Protein 2;
Chain: A, B
Fragment: Efcf-Bar Domain
Synonym: Pacsin2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pacsin2
Expression_system: Cell Free System
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.522 86.145 353.051 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II., Shimada A, Takano K, Shirouzu M, Hanawa-Suetsugu K, Terada T, Toyooka K, Umehara T, Yamamoto M, Yokoyama S, Suetsugu S, FEBS Lett. 2010 Mar 19;584(6):1111-8. Epub 2010 Feb 24. PMID:20188097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3abh.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 3ABH
  • CSU: Contacts of Structural Units for 3ABH
  • Structure Factors (438 Kb)
  • Retrieve 3ABH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ABH from S2C, [Save to disk]
  • Re-refined 3abh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ABH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ABH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ABH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3abh_B] [3abh_A] [3abh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ABH: [FCH ] by SMART
  • Other resources with information on 3ABH
  • Community annotation for 3ABH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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