3AC9	Hydrolase Hydrolase Inhibitor	date	Dec 30, 2009
title	Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp A Manganese
authors	T.Arimori, Y.Yamagata
compound		source
Molecule: Adp-Sugar Pyrophosphatase Chain: A, B Fragment: Residues 14-208 Synonym: Nudt5, Nucleoside Diphosphate-Linked Moiety X Moti Motif 5, Ysa1h; Ec: 3.6.1.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nudt5, Hspc115 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b(+)
symmetry	Space Group: C 1 2 1	R_factor 0.195 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.240 40.442 99.418 90.00 121.59 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	8GD, MN	enzyme	Hydrolase E.C.3.6.1.13 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Diverse substrate recognition and hydrolysis mechanisms of human NUDT5., Arimori T, Tamaoki H, Nakamura T, Kamiya H, Ikemizu S, Takagi Y, Ishibashi T, Harashima H, Sekiguchi M, Yamagata Y, Nucleic Acids Res. 2011 Nov 1;39(20):8972-83. Epub 2011 Jul 17. PMID:21768126

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (3ac9.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 3AC9 CSU: Contacts of Structural Units for 3AC9 Structure Factors (314 Kb) Retrieve 3AC9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AC9 from S2C, [Save to disk] Re-refined 3ac9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3AC9

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AC9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ac9_B] [3ac9_A] [3ac9] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3AC9

Community annotation for 3AC9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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