3ACO Endocytosis date Jan 07, 2010
title Crystal Structure Of The Efcf-Bar Domain Of Human Pacsin2syndapin II (2.7 A)
authors A.Shimada, M.Shirouzu, K.Hanawa-Suetsugu, T.Terada, T.Umehara, S.Suetsugu, M.Yamamoto, S.Yokoyama
compound source
Molecule: Protein Kinase C And Casein Kinase Substrate In Neurons Protein 2;
Chain: A, B
Fragment: Efcf-Bar Domain
Synonym: Pacsin2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pacsin2
Expression_system: Cell Free System (Escherichia Coli)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px080424-07
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.607 84.654 357.335 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II., Shimada A, Takano K, Shirouzu M, Hanawa-Suetsugu K, Terada T, Toyooka K, Umehara T, Yamamoto M, Yokoyama S, Suetsugu S, FEBS Lett. 2010 Mar 19;584(6):1111-8. Epub 2010 Feb 24. PMID:20188097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3aco.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3ACO
  • CSU: Contacts of Structural Units for 3ACO
  • Structure Factors (183 Kb)
  • Retrieve 3ACO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ACO from S2C, [Save to disk]
  • Re-refined 3aco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ACO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ACO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ACO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3aco_A] [3aco] [3aco_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ACO: [FCH ] by SMART
  • Other resources with information on 3ACO
  • Community annotation for 3ACO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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