3AG3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, FME, HEA, MG, NA, NO, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN enzyme
note 3AG3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • G, T


    H, U


    I, V
  • cytochrome-c oxidase activit...


    • K, X


    N, A


    O, B
  • cytochrome-c oxidase activit...


    • Q, D


    R, E


    S, F


    W, J


    Y, L


    Z, M


    Primary referenceBovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate., Muramoto K, Ohta K, Shinzawa-Itoh K, Kanda K, Taniguchi M, Nabekura H, Yamashita E, Tsukihara T, Yoshikawa S, Proc Natl Acad Sci U S A. 2010 Apr 12. PMID:20385840
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (671 Kb) [Save to disk]
  • Biological Unit Coordinates (3ag3.pdb1.gz) 330 Kb
  • Biological Unit Coordinates (3ag3.pdb2.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 3AG3
  • CSU: Contacts of Structural Units for 3AG3
  • Structure Factors (4740 Kb)
  • Retrieve 3AG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AG3 from S2C, [Save to disk]
  • Re-refined 3ag3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ag3] [3ag3_A] [3ag3_B] [3ag3_C] [3ag3_D] [3ag3_E] [3ag3_F] [3ag3_G] [3ag3_H] [3ag3_I] [3ag3_J] [3ag3_K] [3ag3_L] [3ag3_M] [3ag3_N] [3ag3_O] [3ag3_P] [3ag3_Q] [3ag3_R] [3ag3_S] [3ag3_T] [3ag3_U] [3ag3_V] [3ag3_W] [3ag3_X] [3ag3_Y] [3ag3_Z]
  • SWISS-PROT database:

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