3AGL Transferase Transferase Inhibitor date Apr 02, 2010
title Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor
authors A.Pflug, J.Ragozina, A.Uri, D.Bossemeyer, R.A.Engh
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A, B
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkaca, Prkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-285b(+)
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.180 105.170 106.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand A03, SEP, TPO BindingDB enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiversity of bisubstrate binding modes of adenosine analogue-oligoarginine conjugates in protein kinase a and implications for protein substrate interactions., Pflug A, Rogozina J, Lavogina D, Enkvist E, Uri A, Engh RA, Bossemeyer D, J Mol Biol. 2010 Oct 15;403(1):66-77. Epub 2010 Aug 21. PMID:20732331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3agl.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3agl.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3AGL
  • CSU: Contacts of Structural Units for 3AGL
  • Structure Factors (726 Kb)
  • Retrieve 3AGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AGL from S2C, [Save to disk]
  • Re-refined 3agl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AGL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AGL, from MSDmotif at EBI
  • Fold representative 3agl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3agl_A] [3agl] [3agl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3AGL with the sequences similar proteins can be viewed for 3AGL's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3AGL
  • Community annotation for 3AGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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