3AGM Transferase Transferase Inhibitor date Apr 02, 2010
title Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor
authors A.Pflug, J.Ragozina, A.Uri, D.Bossemeyer, R.A.Engh
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkaca, Prkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-285b(+)

Molecule: N~2~-{8-Oxo-8-[4-(9h-Purin-6-Yl)Piperazin-1-Yl]Oc Arginyl-D-Arginyl-D-Arginyl-D-Arginyl-D-Arginyl-D-Argininam
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.223 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.520 85.520 99.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 69P, A67, DAR, NH2, OCE, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiversity of bisubstrate binding modes of adenosine analogue-oligoarginine conjugates in protein kinase a and implications for protein substrate interactions., Pflug A, Rogozina J, Lavogina D, Enkvist E, Uri A, Engh RA, Bossemeyer D, J Mol Biol. 2010 Oct 15;403(1):66-77. Epub 2010 Aug 21. PMID:20732331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3agm.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3AGM
  • CSU: Contacts of Structural Units for 3AGM
  • Structure Factors (376 Kb)
  • Retrieve 3AGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AGM from S2C, [Save to disk]
  • Re-refined 3agm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AGM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AGM, from MSDmotif at EBI
  • Fold representative 3agm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3agm_A] [3agm] [3agm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3AGM: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3AGM
  • Community annotation for 3AGM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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