3AIH Sugar Binding Protein date May 14, 2010
title Human Os-9 Mrh Domain Complexed With Alpha3,Alpha6-Man5
authors T.Satoh, Y.Chen, D.Hu, S.Hanashima, K.Yamamoto, Y.Yamaguchi
compound source
Molecule: Protein Os-9
Chain: A, B
Fragment: Mrh Domain
Synonym: Amplified In Osteosarcoma 9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Os9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold-I (Mbp Fusion)
symmetry Space Group: P 61 2 2
R_factor 0.228 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.100 73.100 180.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand BMA, MAN enzyme
Primary referenceStructural Basis for Oligosaccharide Recognition of Misfolded Glycoproteins by OS-9 in ER-Associated Degradation., Satoh T, Chen Y, Hu D, Hanashima S, Yamamoto K, Yamaguchi Y, Mol Cell. 2010 Dec 22;40(6):905-16. PMID:21172656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3aih.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3aih.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3AIH
  • CSU: Contacts of Structural Units for 3AIH
  • Structure Factors (128 Kb)
  • Retrieve 3AIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AIH from S2C, [Save to disk]
  • Re-refined 3aih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AIH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AIH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3aih] [3aih_B] [3aih_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AIH
  • Community annotation for 3AIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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