3AIL Hydrolase date May 16, 2010
title Crystal Structure Of A Hsl-Like Carboxylesterase From Sulfol Tokodaii Complexed With Paraoxon
authors C.Angkawidjaja, S.Kanaya
compound source
Molecule: 303aa Long Hypothetical Esterase
Chain: A, B, C, D
Synonym: Carboxylesterase
Ec: 3.1.1.1
Engineered: Yes
Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 111955
Strain: 7
Gene: St0071
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a+
symmetry Space Group: P 1 21 1
R_factor 0.162 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.323 114.367 101.892 90.00 108.44 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand DEP, MRD, PO4 enzyme Hydrolase E.C.3.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobus tokodaii., Angkawidjaja C, Koga Y, Takano K, Kanaya S, FEBS J. 2012 Sep;279(17):3071-84. doi: 10.1111/j.1742-4658.2012.08687.x. Epub, 2012 Jul 23. PMID:22748144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (3ail.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (3ail.pdb2.gz) 96 Kb
  • Biological Unit Coordinates (3ail.pdb3.gz) 96 Kb
  • Biological Unit Coordinates (3ail.pdb4.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3AIL
  • CSU: Contacts of Structural Units for 3AIL
  • Structure Factors (1824 Kb)
  • Retrieve 3AIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AIL from S2C, [Save to disk]
  • Re-refined 3ail structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AIL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ail_C] [3ail] [3ail_D] [3ail_A] [3ail_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AIL
  • Community annotation for 3AIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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