3AJB Protein Transport date May 27, 2010
title Crystal Structure Of Human Pex3p In Complex With N-Terminal Peptide
authors Y.Sato, H.Shibata, T.Nakatsu, H.Kato
compound source
Molecule: Peroxisomal Biogenesis Factor 3
Chain: A
Fragment: Cytosolic Domain, Unp Residues 49-373
Synonym: Peroxin 3, Pex3p
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcg_18102, Pex3, Trg18
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Peroxisomal Biogenesis Factor 19
Chain: B
Fragment: N-Terminal Peptide, Unp Residues 1-44
Synonym: Peroxin 19, Pex19p, Peroxisomal Farnesylated Prote Housekeeping Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hk33, Oksw-Cl.22, Pex19, Pxf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 65 2 2
R_factor 0.219 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.600 147.600 86.202 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
note 3AJB is a representative structure
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for docking of peroxisomal membrane protein carrier Pex19p onto its receptor Pex3p., Sato Y, Shibata H, Nakatsu T, Nakano H, Kashiwayama Y, Imanaka T, Kato H, EMBO J. 2010 Dec 15;29(24):4083-93. Epub 2010 Nov 19. PMID:21102411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3ajb.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3AJB
  • Structure Factors (1021 Kb)
  • Retrieve 3AJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AJB from S2C, [Save to disk]
  • Re-refined 3ajb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AJB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AJB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ajb_A] [3ajb_B] [3ajb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AJB
  • Community annotation for 3AJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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