3AJM Apoptosis date Jun 09, 2010
title Crystal Structure Of Programmed Cell Death 10 In Complex Wit 1,3,4,5-Tetrakisphosphate
authors J.Ding, D.C.Wang
compound source
Molecule: Programmed Cell Death Protein 10
Chain: A, B
Fragment: Unp Residues 8-212
Synonym: Tf-1 Cell Apoptosis-Related Protein 15, Cerebral C Malformations 3 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 41 21 2
R_factor 0.214 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.830 89.830 114.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 4IP enzyme
note 3AJM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human programmed cell death 10 complexed with inositol-(1,3,4,5)-tetrakisphosphate: a novel adaptor protein involved in human cerebral cavernous malformation., Ding J, Wang X, Li DF, Hu Y, Zhang Y, Wang DC, Biochem Biophys Res Commun. 2010 Sep 3;399(4):587-92. Epub 2010 Aug 2. PMID:20682288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3ajm.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 3AJM
  • CSU: Contacts of Structural Units for 3AJM
  • Structure Factors (171 Kb)
  • Retrieve 3AJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AJM from S2C, [Save to disk]
  • Re-refined 3ajm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AJM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AJM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ajm] [3ajm_A] [3ajm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AJM
  • Community annotation for 3AJM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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