3ALN Transferase date Aug 04, 2010
title Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Do Complexed With Amp-Pnp
authors T.Matsumoto, T.Kinoshita, Y.Kirii, K.Yokota, K.Hamada, T.Tada
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A, B, C
Fragment: Protein Kinase Domain
Synonym: Map Kinase Kinase 4, Mapkk 4, Mapkerk Kinase 4, M Activating Kinase 1, C-Jun N-Terminal Kinase Kinase 1, Jnkk Kinase 1, Sek1;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnkk1, Map2k4, Mek4, Mkk4, Prkmk4, Serk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b(+)
symmetry Space Group: P 21 21 21
R_factor 0.284 R_Free 0.378
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.508 76.123 173.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANP, MG enzyme Transferase E.C.2.7.12.2 BRENDA
note 3ALN is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structures of MKK4 kinase domain reveal that substrate peptide binds to an allosteric site and induces an auto-inhibition state., Matsumoto T, Kinoshita T, Kirii Y, Yokota K, Hamada K, Tada T, Biochem Biophys Res Commun. 2010 Sep 24;400(3):369-73. Epub 2010 Aug 21. PMID:20732303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3aln.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3aln.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (3aln.pdb3.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3ALN
  • CSU: Contacts of Structural Units for 3ALN
  • Structure Factors (587 Kb)
  • Retrieve 3ALN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ALN from S2C, [Save to disk]
  • Re-refined 3aln structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ALN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ALN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ALN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3aln] [3aln_B] [3aln_A] [3aln_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ALN: [S_TKc ] by SMART
  • Other resources with information on 3ALN
  • Community annotation for 3ALN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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