OCA Atlas for 3AM6

3AM6

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CLR, RET

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, B, D	ion channel activity

Primary reference

Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga., Wada T, Shimono K, Kikukawa T, Hato M, Shinya N, Kim SY, Kimura-Someya T, Shirouzu M, Tamogami J, Miyauchi S, Jung KH, Kamo N, Yokoyama S, J Mol Biol. 2011 Sep 2;411(5):986-98. Epub 2011 Jun 25. PMID:21726566

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]

Biological Unit Coordinates (3am6.pdb1.gz) 38 Kb

Biological Unit Coordinates (3am6.pdb2.gz) 37 Kb

Biological Unit Coordinates (3am6.pdb3.gz) 38 Kb

Biological Unit Coordinates (3am6.pdb4.gz) 37 Kb

Biological Unit Coordinates (3am6.pdb5.gz) 143 Kb

LPC: Ligand-Protein Contacts for 3AM6

CSU: Contacts of Structural Units for 3AM6

Structure Factors (293 Kb)

Retrieve 3AM6 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3AM6 from S2C, [Save to disk]

Re-refined 3am6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3AM6 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3am6] [3am6_A] [3am6_B] [3am6_C] [3am6_D]

SWISS-PROT database:

Domain found in 3AM6: [Bac_rhodopsin ] by SMART

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