3AM9 Oxidoreductase date Aug 18, 2010
title Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy Fyx-
authors K.Matsumoto, K.Okamoto, N.Ashizawa, T.Matsumura, T.Kusano, T.Nish
compound source
Molecule: Xanthine Dehydrogenaseoxidase
Chain: A, B
Synonym: Xanthine Oxidoreductase, Xanthine Dehydrogenase, X Xanthine Oxidase, Xo;
Ec: 1.17.1.4, 1.17.3.2
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.916 124.722 146.195 90.00 91.04 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand BCT, CA, FAD, FES, FYO, GOL, MOS, MTE enzyme Oxidoreductase E.C.1.17.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceFYX-051 : A novel and potent hybrid type inhibitor of xanthine oxidoreductase., Matsumoto K, Okamoto K, Ashizawa N, Nishino T, J Pharmacol Exp Ther. 2010 Oct 15. PMID:20952484
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (3am9.pdb1.gz) 437 Kb
  • LPC: Ligand-Protein Contacts for 3AM9
  • CSU: Contacts of Structural Units for 3AM9
  • Structure Factors (2473 Kb)
  • Retrieve 3AM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AM9 from S2C, [Save to disk]
  • Re-refined 3am9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AM9 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AM9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AM9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3am9_A] [3am9_B] [3am9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3AM9: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 3AM9
  • Community annotation for 3AM9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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