3AMY Transferase date Aug 25, 2010
title Crystal Structure Of Human Ck2 Alpha Complexed With Apigenin
authors Y.Sekiguchi, T.Nakaniwa, T.Kinoshita, T.Tada
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Fragment: Protein Kinase Domain, Residues 1-335
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hms174
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 6p-1
symmetry Space Group: P 21 21 21
R_factor 0.267 R_Free 0.340
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.630 73.030 77.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand AGI, EDO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3amy.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3AMY
  • CSU: Contacts of Structural Units for 3AMY
  • Structure Factors (191 Kb)
  • Retrieve 3AMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AMY from S2C, [Save to disk]
  • Re-refined 3amy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AMY, from MSDmotif at EBI
  • Fold representative 3amy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3amy] [3amy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3AMY: [S_TKc ] by SMART
  • Alignments of the sequence of 3AMY with the sequences similar proteins can be viewed for 3AMY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3AMY
  • Community annotation for 3AMY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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