3AMZ Oxidoreductase date Aug 27, 2010
title Bovine Xanthine Oxidoreductase Urate Bound Form
authors K.Okamoto, B.T.Eger, E.F.Pai, T.Nishino
compound source
Molecule: Xanthine Dehydrogenaseoxidase
Chain: A, B
Synonym: Xanthine Oxidoreductase, Xanthine Dehydrogenase, X Xanthine Oxidase, Xo;
Ec: 1.17.1.4, 1.17.3.2
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.151 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.211 124.530 148.025 90.00 91.07 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BCT, CA, FAD, FES, GOL, MOS, MTE, NAI, URC enzyme Oxidoreductase E.C.1.17.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceCrystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate., Okamoto K, Kawaguchi Y, Eger BT, Pai EF, Nishino T, J Am Chem Soc. 2010 Nov 15. PMID:21077683
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (449 Kb) [Save to disk]
  • Biological Unit Coordinates (3amz.pdb1.gz) 440 Kb
  • LPC: Ligand-Protein Contacts for 3AMZ
  • CSU: Contacts of Structural Units for 3AMZ
  • Structure Factors (2808 Kb)
  • Retrieve 3AMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AMZ from S2C, [Save to disk]
  • Re-refined 3amz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AMZ in 3D
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  • Visual 3D analysis of 3AMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AMZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3amz_A] [3amz] [3amz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3AMZ: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 3AMZ
  • Community annotation for 3AMZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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