3AP3 Transferase date Oct 09, 2010
title Crystal Structure Of Human Tyrosylprotein Sulfotransferase-2 With Pap
authors T.Teramoto, Y.Fujikawa, Y.Kawaguchi, K.Kurogi, M.Soejima, R.Adach Y.Nakanishi, E.Mishiro-Sato, M.C.Liu, Y.Sakakibara, M.Suiko, M. Y.Kakuta
compound source
Molecule: Protein-Tyrosine Sulfotransferase 2
Chain: A, B, C, D
Fragment: Unp Residues 43-377
Synonym: Tyrosylprotein Sulfotransferase 2, Tpst-2
Ec: 2.8.2.20
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tpst2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 2 21 21
R_factor 0.290 R_Free 0.371
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.432 81.326 226.659 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand A3P enzyme Transferase E.C.2.8.2.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction., Teramoto T, Fujikawa Y, Kawaguchi Y, Kurogi K, Soejima M, Adachi R, Nakanishi Y, Mishiro-Sato E, Liu MC, Sakakibara Y, Suiko M, Kimura M, Kakuta Y, Nat Commun. 2013;4:1572. doi: 10.1038/ncomms2593. PMID:23481380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (3ap3.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (3ap3.pdb2.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3AP3
  • CSU: Contacts of Structural Units for 3AP3
  • Structure Factors (79 Kb)
  • Retrieve 3AP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AP3 from S2C, [Save to disk]
  • Re-refined 3ap3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AP3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AP3, from MSDmotif at EBI
  • Fold representative 3ap3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ap3_A] [3ap3_B] [3ap3_C] [3ap3] [3ap3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AP3
  • Community annotation for 3AP3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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