3ASW Cell Adhesion date Dec 22, 2010
title Structural And Biochemical Characterization Of Clfb:Ligand Interactions
authors V.K.Ganesh
compound source
Molecule: Clumping Factor B
Chain: A
Fragment: N2 N3 Domain (Unp Residues 212-531)
Synonym: Fibrinogen Receptor B, Fibrinogen-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 158879
Strain: N315
Gene: Clfb, Sa2423
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tail Region Derived Peptide
Chain: B
Synonym: 15-Mer From Keratin, Type I Cytoskeletal 10
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 43
R_factor 0.182 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.598 85.598 84.795 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3asw.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 3ASW
  • Structure Factors (287 Kb)
  • Retrieve 3ASW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ASW from S2C, [Save to disk]
  • Re-refined 3asw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ASW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ASW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ASW, from MSDmotif at EBI
  • Fold representative 3asw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3asw_B] [3asw_A] [3asw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3ASW with the sequences similar proteins can be viewed for 3ASW's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3ASW
  • Community annotation for 3ASW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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