3AUF Transferase date Feb 03, 2011
title Crystal Structure Of Glycinamide Ribonucleotide Transformyla Symbiobacterium Toebii
authors M.Kanagawa, S.Baba, T.Nagira, S.Kuramitsu, S.Yokoyama, G.Sampei, G Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Glycinamide Ribonucleotide Transformylase 1
Chain: A
Synonym: Phosphoribosylglycinamide Formyltransferase
Engineered: Yes
 Organism_scientific: Symbiobacterium Toebii
Organism_taxid: 120580
Gene: Purn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Histev
symmetry Space Group: P 31 2 1
R_factor 0.209 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.316 85.316 58.019 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures and reaction mechanisms of the two related enzymes, PurN and PurU., Sampei G, Kanagawa M, Baba S, Shimasaki T, Taka H, Mitsui S, Fujiwara S, Yanagida Y, Kusano M, Suzuki S, Terao K, Kawai H, Fukai Y, Nakagawa N, Ebihara A, Kuramitsu S, Yokoyama S, Kawai G, J Biochem. 2013 Dec;154(6):569-79. doi: 10.1093/jb/mvt090. Epub 2013 Oct 9. PMID:24108189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3auf.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 3AUF
  • Structure Factors (124 Kb)
  • Retrieve 3AUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AUF from S2C, [Save to disk]
  • Re-refined 3auf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3AUF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AUF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3auf_A] [3auf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3AUF
  • Community annotation for 3AUF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science