3AVK	Recombination Inhibitor	date	Mar 05, 2011
title	Crystal Structures Of Novel Allosteric Peptide Inhibitors Of Integrase In The Ledgf Binding Site
authors	T.S.Peat, J.J.Deadman, J.Newman, D.I.Rhodes
compound		source
Molecule: Integrase Chain: A, B Fragment: Ccd Domain (Unp Residues 1197-1359) Synonym: In Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11698 Strain: New York-5 Isolate Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
Molecule: Ledgf Peptide Chain: D, F Synonym: Lens Epithelial Derived Growth Factor Peptide Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Chemical Synthsis
symmetry	Space Group: P 31	R_factor 0.159 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.743 70.743 66.609 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	ACY, CL, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structures of Novel Allosteric Peptide Inhibitors of HIV Integrase Identify New Interactions at the LEDGF Binding Site., Rhodes DI, Peat TS, Vandegraaff N, Jeevarajah D, Newman J, Martyn J, Coates JA, Ede NJ, Rea P, Deadman JJ, Chembiochem. 2011 Aug 17. doi: 10.1002/cbic.201100350. PMID:21850718

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3avk.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 3AVK CSU: Contacts of Structural Units for 3AVK Structure Factors (551 Kb) Retrieve 3AVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AVK from S2C, [Save to disk] Re-refined 3avk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3AVK

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AVK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3avk] [3avk_D] [3avk_B] [3avk_A] [3avk_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3AVK

Community annotation for 3AVK at PDBWiki (http://pdbwiki.org)

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