3AX7 Oxidoreductase date Mar 30, 2011
title Bovine Xanthine Oxidase, Protease Cleaved Form
authors H.Ishikita, B.T.Eger, E.F.Pai, K.Okamoto, T.Nishino
compound source
Molecule: Xanthine Dehydrogenaseoxidase
Chain: A, B
Synonym: Xanthine Dehydrogenase, Xd, Xanthine Oxidase, Xo, Oxidoreductase;
Ec: 1.17.1.4, 1.17.3.2
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.477 73.151 146.267 90.00 98.18 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand BCT, CA, FAD, FES, GOL, SAL, XAX enzyme Oxidoreductase E.C.1.17.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceProtein conformational gating of enzymatic activity in xanthine oxidoreductase., Ishikita H, Eger BT, Okamoto K, Nishino T, Pai EF, J Am Chem Soc. 2012 Jan 18;134(2):999-1009. Epub 2011 Dec 29. PMID:22145797
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (404 Kb) [Save to disk]
  • Biological Unit Coordinates (3ax7.pdb1.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 3AX7
  • CSU: Contacts of Structural Units for 3AX7
  • Structure Factors (1763 Kb)
  • Retrieve 3AX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AX7 from S2C, [Save to disk]
  • Re-refined 3ax7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AX7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AX7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ax7] [3ax7_B] [3ax7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3AX7: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 3AX7
  • Community annotation for 3AX7 at PDBWiki (http://pdbwiki.org)
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