3AY5 Cell Cycle date Apr 28, 2011
title Crystal Structure Of Hhm (Human Homologue Of Murine Maternal Molecule)
authors A.Seto, R.Ishitani, O.Nureki
compound source
Molecule: Cyclin-D1-Binding Protein 1
Chain: A
Synonym: Grap2 And Cyclin-D-Interacting Protein, Human Homo Maid;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccndbp1, Dip1, Gcip, Hhm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 32 2 1
R_factor 0.222 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.031 105.031 124.266 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition., Ishii R, Isogaya K, Seto A, Koinuma D, Watanabe Y, Arisaka F, Yaguchi S, Ikushima H, Dohmae N, Miyazono K, Miyazawa K, Ishitani R, Nureki O, EMBO J. 2012 Mar 27;31(11):2541-52. doi: 10.1038/emboj.2012.77. PMID:22453338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3ay5.pdb1.gz) 99 Kb
  • CSU: Contacts of Structural Units for 3AY5
  • Structure Factors (335 Kb)
  • Retrieve 3AY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AY5 from S2C, [Save to disk]
  • Re-refined 3ay5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AY5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AY5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ay5_A] [3ay5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AY5
  • Community annotation for 3AY5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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