OCA Atlas for 3AYT

3AYT

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, B, A

Primary reference

In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress., Nakane S, Wakamatsu T, Masui R, Kuramitsu S, Fukui K, J Biol Chem. 2011 Dec 2;286(48):41636-46. Epub 2011 Oct 7. PMID:21984829

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]

Biological Unit Coordinates (3ayt.pdb1.gz) 42 Kb

Biological Unit Coordinates (3ayt.pdb2.gz) 41 Kb

Biological Unit Coordinates (3ayt.pdb3.gz) 42 Kb

Biological Unit Coordinates (3ayt.pdb4.gz) 42 Kb

Biological Unit Coordinates (3ayt.pdb5.gz) 80 Kb

Biological Unit Coordinates (3ayt.pdb6.gz) 79 Kb

LPC: Ligand-Protein Contacts for 3AYT

CSU: Contacts of Structural Units for 3AYT

Structure Factors (782 Kb)

Retrieve 3AYT in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3AYT from S2C, [Save to disk]

Re-refined 3ayt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3AYT in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ayt] [3ayt_A] [3ayt_B] [3ayt_C] [3ayt_D]

SWISS-PROT database:

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