3AZJ Crystal Structure of Human Nucleosome Core Particle Containing H4K44Q mutation date
authors Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.
compound source
R_Free 0.268
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand CL, MN enzyme
A, E

C, G

F, B

H, D

Primary referenceComprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains., Iwasaki W, Tachiwana H, Kawaguchi K, Shibata T, Kagawa W, Kurumizaka H, Biochemistry. 2011 Sep 13;50(36):7822-32. Epub 2011 Aug 17. PMID:21812398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (3azj.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 3AZJ
  • CSU: Contacts of Structural Units for 3AZJ
  • Structure Factors (409 Kb)
  • Retrieve 3AZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AZJ from S2C, [Save to disk]
  • Re-refined 3azj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AZJ, from MSDmotif at EBI
  • Fold representative 3azj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3azj_I] [3azj_C] [3azj_J] [3azj_G] [3azj_B] [3azj_D] [3azj_H] [3azj_E] [3azj_F] [3azj_A] [3azj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3AZJ: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 3AZJ
  • Community annotation for 3AZJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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