3B28	Chaperone Chaperone Inhibitor	date	Jul 21, 2011
title	Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor C
authors	T.A.Fukami, N.Ono
compound		source
Molecule: Heat Shock Protein Hsp 90-Alpha Chain: A, B Fragment: N-Terminal Domain Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hsp90aa1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Cp Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7-7
symmetry	Space Group: C 1 2 1	R_factor 0.163 R_Free 0.181
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.980 98.810 64.180 90.00 124.43 90.00
method	X-Ray Diffraction	resolution	1.35 Å
ligand	B2X, GOL, MG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Lead generation of heat shock protein 90 inhibitors by a combination of fragment-based approach, virtual screening, and structure-based drug design., Miura T, Fukami TA, Hasegawa K, Ono N, Suda A, Shindo H, Yoon DO, Kim SJ, Na YJ, Aoki Y, Shimma N, Tsukuda T, Shiratori Y, Bioorg Med Chem Lett. 2011 Oct 1;21(19):5778-83. Epub 2011 Aug 6. PMID:21875802

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3b28.pdb1.gz) 44 Kb Biological Unit Coordinates (3b28.pdb2.gz) 43 Kb Biological Unit Coordinates (3b28.pdb3.gz) 85 Kb Biological Unit Coordinates (3b28.pdb4.gz) 85 Kb LPC: Ligand-Protein Contacts for 3B28 CSU: Contacts of Structural Units for 3B28 Structure Factors (1838 Kb) Retrieve 3B28 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B28 from S2C, [Save to disk] Re-refined 3b28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B28 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B28

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B28, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b28] [3b28_B] [3b28_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3B28: [HATPase_c ] by SMART

Other resources with information on 3B28

Community annotation for 3B28 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---