3B2D	Immune System	date	Jul 29, 2011
title	Crystal Structure Of Human Rp105md-1 Complex
authors	U.Ohto, T.Shimizu
compound		source
Molecule: Cd180 Antigen Chain: A, B Fragment: Unp Residues 21-626 Synonym: Lymphocyte Antigen 64, Radioprotective 105 Kda Pro Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd180, Ly64, Rp105 Expression_system: Drosophila Expression_system_taxid: 7215 Expression_system_cell: S2
Molecule: Lymphocyte Antigen 86 Chain: C, D Synonym: Ly-86, Protein Md-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ly86, Md1 Expression_system: Drosophila Expression_system_taxid: 7215 Expression_system_cell: S2
symmetry	Space Group: P 21 21 2	R_factor 0.218 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 203.997 66.441 119.097 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Crystal Structures of Mouse and Human RP105/MD-1 Complexes Reveal Unique Dimer Organization of the Toll-Like Receptor Family., Ohto U, Miyake K, Shimizu T, J Mol Biol. 2011 Nov 4;413(4):815-25. Epub 2011 Sep 19. PMID:21959264

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (482 Kb) [Save to disk] Biological Unit Coordinates (3b2d.pdb1.gz) 475 Kb LPC: Ligand-Protein Contacts for 3B2D CSU: Contacts of Structural Units for 3B2D Structure Factors (586 Kb) Retrieve 3B2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B2D from S2C, [Save to disk] Re-refined 3b2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B2D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b2d_A] [3b2d_C] [3b2d_D] [3b2d_B] [3b2d] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3B2D: [LRR] [LRRCT] [ML ] by SMART

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