3B2Z Hydrolase date Oct 19, 2007
title Crystal Structure Of Adamts4 (Apo Form)
authors L.Mosyak, M.Stahl, W.Somers
compound source
Molecule: Adamts-4
Chain: A, B, C, D, E, F, G, H
Synonym: A Disintegrin And Metalloproteinase With Thrombosp Motifs 4, Adam-Ts 4, Adam-Ts4, Aggrecanase-1, Admp-1;
Ec: 3.4.24.82
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adamts4, Kiaa0688
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
symmetry Space Group: P 1 21 1
R_factor 0.254 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.330 84.315 150.146 90.00 112.23 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.82 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structures of the two major aggrecan degrading enzymes, ADAMTS4 and ADAMTS5., Mosyak L, Georgiadis K, Shane T, Svenson K, Hebert T, McDonagh T, Mackie S, Olland S, Lin L, Zhong X, Kriz R, Reifenberg EL, Collins-Racie LA, Corcoran C, Freeman B, Zollner R, Marvell T, Vera M, Sum PE, Lavallie ER, Stahl M, Somers W, Protein Sci. 2007 Nov 27;. PMID:18042673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (356 Kb) [Save to disk]
  • Biological Unit Coordinates (3b2z.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3b2z.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (3b2z.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (3b2z.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (3b2z.pdb5.gz) 48 Kb
  • Biological Unit Coordinates (3b2z.pdb6.gz) 49 Kb
  • Biological Unit Coordinates (3b2z.pdb7.gz) 49 Kb
  • Biological Unit Coordinates (3b2z.pdb8.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3B2Z
  • CSU: Contacts of Structural Units for 3B2Z
  • Likely Quarternary Molecular Structure file(s) for 3B2Z
  • Retrieve 3B2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B2Z from S2C, [Save to disk]
  • View 3B2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B2Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B2Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b2z_A] [3b2z_F] [3b2z] [3b2z_E] [3b2z_B] [3b2z_G] [3b2z_C] [3b2z_D] [3b2z_H]
  • SWISS-PROT database: [O75173]
  • Domain organization of [ATS4_HUMAN] by SWISSPFAM
  • Domain found in 3B2Z: [ACR ] by SMART
  • Other resources with information on 3B2Z
  • Community annotation for 3B2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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