3B35	Hydrolase	date	Oct 19, 2007
title	Crystal Structure Of The M180a Mutant Of The Aminopeptidase Vibrio Proteolyticus
authors	N.J.Ataie, Q.Q.Hoang, G.A.Petsko, D.Ringe
compound		source
Molecule: Bacterial Leucyl Aminopeptidase Chain: A Fragment: Residues 107-397 Ec: 3.4.11.10 Engineered: Yes Mutation: Yes		Organism_scientific: Vibrio Proteolyticus Organism_taxid: 671 Strain: Dsm 30189 Ifo 13287 Lmg 3772 Ncimb 1326 Atcc: 15338 Gene: Aap Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: P 61 2 2	R_factor 0.149 R_Free 0.166
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.148 109.148 90.990 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.10 Å
ligand	NA, SCN, ZN	enzyme	Hydrolase E.C.3.4.11.10 BRENDA
Primary reference	Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus., Ataie NJ, Hoang QQ, Zahniser MP, Tu Y, Milne A, Petsko GA, Ringe D, Biochemistry. 2008 Jul 22;47(29):7673-83. Epub 2008 Jun 25. PMID:18576673

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (3b35.pdb1.gz) 113 Kb LPC: Ligand-Protein Contacts for 3B35 CSU: Contacts of Structural Units for 3B35 Likely Quarternary Molecular Structure file(s) for 3B35 Structure Factors (898 Kb) Retrieve 3B35 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B35 from S2C, [Save to disk] Re-refined 3b35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B35 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B35

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B35, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b35] [3b35_A] SWISS-PROT database: [Q01693] Domain organization of [AMPX_VIBPR] by SWISSPFAM

Other resources with information on 3B35

Community annotation for 3B35 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---