3B36 Chaperone date Oct 19, 2007
title Structure Of M26l Dj-1
authors M.Lakshminarasimhan, M.T.Maldonado, W.Zhou, A.L.Fink, M.A.Wilson
compound source
Molecule: Protein Dj-1
Chain: A
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor 0.166 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.818 74.818 75.264 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1(,)., Lakshminarasimhan M, Maldonado MT, Zhou W, Fink AL, Wilson MA, Biochemistry. 2008 Feb 5;47(5):1381-92. Epub 2008 Jan 9. PMID:18181649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3b36.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3B36
  • CSU: Contacts of Structural Units for 3B36
  • Likely Quarternary Molecular Structure file(s) for 3B36
  • Structure Factors (269 Kb)
  • Retrieve 3B36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B36 from S2C, [Save to disk]
  • Re-refined 3b36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B36, from MSDmotif at EBI
  • Fold representative 3b36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b36] [3b36_A]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 3B36
  • Community annotation for 3B36 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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