3B36	Chaperone	date	Oct 19, 2007
title	Structure Of M26l Dj-1
authors	M.Lakshminarasimhan, M.T.Maldonado, W.Zhou, A.L.Fink, M.A.Wilson
compound		source
Molecule: Protein Dj-1 Chain: A Synonym: Oncogene Dj1, Parkinson Disease Protein 7 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Park7 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 31 2 1	R_factor 0.166 R_Free 0.175
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.818 74.818 75.264 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CL, EDO	enzyme
Gene Ontology	Chain Function Process Component A RNA binding mRNA binding peroxidase activity protein binding peptidase activity hydrolase activity protein homodimerization act... peroxiredoxin activity synaptic transmission, dopam... proteolysis autophagy response to stress inflammatory response mitochondrion organization single fertilization cell death adult locomotory behavior negative regulation of prote... cellular response to oxidati... response to hydrogen peroxid... hydrogen peroxide metabolic ... regulation of neuron apoptot... negative regulation of neuro... regulation of inflammatory r... protein stabilization dopamine uptake involved in ... membrane depolarization membrane hyperpolarization negative regulation of cell ... regulation of androgen recep... cellular response to hydroge... positive regulation of oxida... negative regulation of extri... nucleus cytoplasm mitochondrion
Primary reference	Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1(,)., Lakshminarasimhan M, Maldonado MT, Zhou W, Fink AL, Wilson MA, Biochemistry. 2008 Feb 5;47(5):1381-92. Epub 2008 Jan 9. PMID:18181649

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (3b36.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 3B36 CSU: Contacts of Structural Units for 3B36 Likely Quarternary Molecular Structure file(s) for 3B36 Structure Factors (269 Kb) Retrieve 3B36 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B36 from S2C, [Save to disk] Re-refined 3b36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B36 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3B36

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3B36, from MSDmotif at EBI Fold representative 3b36 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b36_A] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM Alignments of the sequence of 3B36 with the sequences similar proteins can be viewed for 3B36's classification [PARK7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PARK7_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3B36

Community annotation for 3B36 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---