3B3K	Transcription	date	Oct 22, 2007
title	Crystal Structure Of The Complex Between Ppargamma And The Full Agonist Lt175
authors	G.Pochetti, R.Montanari, F.Mazza, F.Loiodice, G.Fracchiolla, M.Crestani, C.Godio
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Unp Residues 223-504 Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: C 1 2 1	R_factor 0.237 R_Free 0.316
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.144 61.569 118.797 90.00 103.40 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	LRG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the peroxisome proliferator-activated receptor gamma (PPARgamma) ligand binding domain complexed with a novel partial agonist: a new region of the hydrophobic pocket could be exploited for drug design., Montanari R, Saccoccia F, Scotti E, Crestani M, Godio C, Gilardi F, Loiodice F, Fracchiolla G, Laghezza A, Tortorella P, Lavecchia A, Novellino E, Mazza F, Aschi M, Pochetti G, J Med Chem. 2008 Dec 25;51(24):7768-76. PMID:19053776

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (3b3k.pdb1.gz) 92 Kb Biological Unit Coordinates (3b3k.pdb2.gz) 93 Kb LPC: Ligand-Protein Contacts for 3B3K CSU: Contacts of Structural Units for 3B3K Likely Quarternary Molecular Structure file(s) for 3B3K Structure Factors (164 Kb) Retrieve 3B3K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B3K from S2C, [Save to disk] Re-refined 3b3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B3K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B3K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B3K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b3k] [3b3k_A] [3b3k_B] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 3B3K: [HOLI ] by SMART

Other resources with information on 3B3K

Community annotation for 3B3K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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