3B5H Cell Invasion date Oct 26, 2007
title Crystal Structure Of The Extracellular Portion Of Hab18gcd1
authors X.L.Yu, Z.N.Chen
compound source
Molecule: Cervical Emmprin
Chain: A, B, C, D
Fragment: Extracellular Portion, Unp Residues 22-205
Synonym: Hab18gcd147
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bsg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origamib(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 41 21 2
R_factor 0.243 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.481 126.481 169.926 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ACT enzyme
Primary referenceCrystal structure of HAb18G/CD147: implications for immunoglobulin superfamily homophilic adhesion., Yu XL, Hu T, Du JM, Yang XM, Zhang J, Yang B, Shen X, Zhang Z, Zhong WD, Wen N, Ding JP, Jiang H, Zhu P, Chen ZN, J Biol Chem. 2008 Apr 22;. PMID:18430721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3b5h.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3b5h.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (3b5h.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (3b5h.pdb4.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3B5H
  • CSU: Contacts of Structural Units for 3B5H
  • Likely Quarternary Molecular Structure file(s) for 3B5H
  • Structure Factors (612 Kb)
  • Retrieve 3B5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B5H from S2C, [Save to disk]
  • Re-refined 3b5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B5H, from MSDmotif at EBI
  • Fold representative 3b5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b5h] [3b5h_D] [3b5h_C] [3b5h_B] [3b5h_A]
  • SWISS-PROT database: [P35613]
  • Belongs to the basigin (basigin) family according to TCDB.
  • Domain organization of [BASI_HUMAN] by SWISSPFAM
  • Domain found in 3B5H: [IG ] by SMART
  • Other resources with information on 3B5H
  • Community annotation for 3B5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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