3B5R Transcription date Oct 26, 2007
title Crystal Structure Of The Androgen Receptor Ligand Binding Domain In Complex With Sarm C-31
authors C.E.Bohl, D.D.Miller, J.T.Dalton
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Residues 671-919
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.272
length a length b length c angle alpha angle beta angle gamma
54.889 66.803 69.159 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand B5R BindingDB enzyme
Primary referenceEffect of B-ring substitution pattern on binding mode of propionamide selective androgen receptor modulators., Bohl CE, Wu Z, Chen J, Mohler ML, Yang J, Hwang DJ, Mustafa S, Miller DD, Bell CE, Dalton JT, Bioorg Med Chem Lett. 2008 Oct 15;18(20):5567-70. Epub 2008 Sep 5. PMID:18805694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3b5r.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3B5R
  • CSU: Contacts of Structural Units for 3B5R
  • Likely Quarternary Molecular Structure file(s) for 3B5R
  • Structure Factors (376 Kb)
  • Retrieve 3B5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B5R from S2C, [Save to disk]
  • Re-refined 3b5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B5R, from MSDmotif at EBI
  • Fold representative 3b5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b5r] [3b5r_A]
  • SWISS-PROT database: [P10275]
  • Domain organization of [ANDR_HUMAN] by SWISSPFAM
  • Domain found in 3B5R: [HOLI ] by SMART
  • Other resources with information on 3B5R
  • Community annotation for 3B5R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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