3B65 Transcription date Oct 27, 2007
title Crystal Structure Of The Androgen Receptor Ligand Binding Do Complex With Sarm S-24
authors C.E.Bohl, D.D.Miller, J.T.Dalton
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Residues 671-919
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.242 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.639 66.712 69.042 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 3B6 BindingDB enzyme
Primary referenceEffect of B-ring substitution pattern on binding mode of propionamide selective androgen receptor modulators., Bohl CE, Wu Z, Chen J, Mohler ML, Yang J, Hwang DJ, Mustafa S, Miller DD, Bell CE, Dalton JT, Bioorg Med Chem Lett. 2008 Oct 15;18(20):5567-70. Epub 2008 Sep 5. PMID:18805694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3b65.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3B65
  • CSU: Contacts of Structural Units for 3B65
  • Likely Quarternary Molecular Structure file(s) for 3B65
  • Structure Factors (334 Kb)
  • Retrieve 3B65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B65 from S2C, [Save to disk]
  • Re-refined 3b65 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B65
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B65, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b65_A] [3b65]
  • SWISS-PROT database: [P10275]
  • Domain organization of [ANDR_HUMAN] by SWISSPFAM
  • Domain found in 3B65: [HOLI ] by SMART
    • Other resources with information on 3B65
  • Community annotation for 3B65 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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