3B6U Motor Protein date Oct 29, 2007
title Crystal Structure Of The Motor Domain Of Human Kinesin Famil 3b In Complex With Adp
authors H.Zhu, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Kinesin-Like Protein Kif3b
Chain: A, B
Fragment: Motor Domain: Residues 6-359
Synonym: Microtubule Plus End-Directed Kinesin Motor 3b, Hh
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif3b, Kiaa0359
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon(+)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhp
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.731 95.852 63.883 90.00 92.61 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ADP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3b6u.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (3b6u.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3B6U
  • CSU: Contacts of Structural Units for 3B6U
  • Structure Factors (978 Kb)
  • Retrieve 3B6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B6U from S2C, [Save to disk]
  • Re-refined 3b6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B6U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b6u_B] [3b6u_A] [3b6u]
  • SWISS-PROT database: [O15066]
  • Domain organization of [KIF3B_HUMAN] by SWISSPFAM
  • Domain found in 3B6U: [KISc ] by SMART
    • Other resources with information on 3B6U
  • Community annotation for 3B6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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