3B6Y Protein Binding date Oct 29, 2007
title Crystal Structure Of The Second Hin-200 Domain Of Interferon Protein 16
authors J.C.C.Liao, R.Lam, M.Ravichandran, S.Duan, W.Tempel, N.Y.Chirgadz C.H.Arrowsmith, Northeast Structural Genomics Consortium (Ne
compound source
Molecule: Gamma-Interferon-Inducible Protein Ifi-16
Chain: A, B
Fragment: Second (C-Terminal) Hin-200 Domain
Synonym: Interferon-Inducible Myeloid Differentiation Trans Activator, Ifi 16;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifi16, Ifngip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Condon-Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.999 92.887 100.372 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3b6y.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3b6y.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3B6Y
  • CSU: Contacts of Structural Units for 3B6Y
  • Structure Factors (122 Kb)
  • Retrieve 3B6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B6Y from S2C, [Save to disk]
  • Re-refined 3b6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B6Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B6Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b6y] [3b6y_B] [3b6y_A]
  • SWISS-PROT database: [Q16666]
  • Domain organization of [IF16_HUMAN] by SWISSPFAM
    • Other resources with information on 3B6Y
  • Community annotation for 3B6Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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