3B7B Transferase date Oct 30, 2007
title Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
authors R.E.Collins, J.R.Horton, X.Cheng
compound source
Molecule: Euchromatic Histone-Lysine N-Methyltransferase 1
Chain: A, B
Fragment: Ankyrin Repeat Domains 2-7
Synonym: Histone-Lysine N-Methyltransferase, H3 Lysine-9 Specific 5, Histone H3-K9 Methyltransferase 5, H3-K9- Hmtase 5, Eu-Hmtase1, G9a- Like Protein 1, Glp1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehmt1, Euhmtase1, Kiaa1876
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codonplus
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.261
length a length b length c angle alpha angle beta angle gamma
59.790 151.260 167.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.99 Å
ligand SO4 enzyme Transferase E.C. BRENDA
A, B

Primary referenceThe ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules., Collins RE, Northrop JP, Horton JR, Lee DY, Zhang X, Stallcup MR, Cheng X, Nat Struct Mol Biol. 2008 Mar;15(3):245-50. Epub 2008 Feb 10. PMID:18264113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3b7b.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3b7b.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3B7B
  • CSU: Contacts of Structural Units for 3B7B
  • Likely Quarternary Molecular Structure file(s) for 3B7B
  • Retrieve 3B7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B7B from S2C, [Save to disk]
  • View 3B7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B7B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B7B, from MSDmotif at EBI
  • Fold representative 3b7b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b7b] [3b7b_A] [3b7b_B]
  • SWISS-PROT database: [Q9H9B1]
  • Domain organization of [EHMT1_HUMAN] by SWISSPFAM
  • Domain found in 3B7B: [ANK ] by SMART
  • Other resources with information on 3B7B
  • Community annotation for 3B7B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science