3B7K Hydrolase date Oct 31, 2007
title Human Acyl-Coenzyme A Thioesterase 12
authors L.Lehtio, R.D.Busam, C.H.Arrowsmith, R.Collins, L.G.Dahlgren, A.M S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, B.M.Hallberg, M.D A.Johansson, I.Johansson, A.Kallas, T.Karlberg, T.Kotenyova, M.M M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark, M.Sunds L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weige M.Welin, H.Berglund, Structural Genomics Consortium (Sgc)
compound source
Molecule: Acyl-Coenzyme A Thioesterase 12
Chain: A, B, C
Fragment: Acyl Coenzyme A Hydrolase Domains 1 And 2: Residu
Synonym: Acyl-Coa Thioesterase 12, Acyl-Coa Thioester Hydro Cytoplasmic Acetyl-Coa Hydrolase 1, Cach-1, Hcach-1, Start Containing Protein 12, Stard12;
Ec: 3.1.2.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acot12, Cach, Cach1, Stard12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Gold Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.234 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.700 126.050 185.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand COA enzyme Hydrolase E.C.3.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3b7k.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3B7K
  • CSU: Contacts of Structural Units for 3B7K
  • Structure Factors (414 Kb)
  • Retrieve 3B7K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B7K from S2C, [Save to disk]
  • Re-refined 3b7k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B7K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B7K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B7K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b7k_B] [3b7k_A] [3b7k_C] [3b7k]
  • SWISS-PROT database: [Q8WYK0]
  • Belongs to the acyl-coa thioesterase (acot) family according to TCDB.
  • Domain organization of [ACO12_HUMAN] by SWISSPFAM
  • Other resources with information on 3B7K
  • Community annotation for 3B7K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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